dbiflat indexes a flat file database of one or
more files and builds EMBL CD-ROM format index files.
Here is a sample session with dbiflat, using the
data in the test/embl directory of the
distribution (normally indexed as tembl):
% dbiflat
EMBL : EMBL
SWISS : Swiss-Prot, SpTrEMBL, TrEMBLnew
GB : Genbank, DDBJ
Entry format [SWISS]: EMBL
Database name: tembl
Database directory [.]: /nfs/disk42/pmr/emboss/osf/emboss/test/embl/
Wildcard database filename [*.dat]:
Release number [0.0]: 1.0
Index date [00/00/00]: 04/02/00
Mandatory qualifiers:
- -idformat (menu)
-
Entry format.
- -directory (string)
-
Database directory.
- -filenames (string)
-
Wildcard database filename.
- [-dbname] (string)
-
Database name.
- -release (string)
-
Release number.
- -date (string)
-
Index date.
Advanced qualifiers:
- -fields (menu)
-
Index fields.
- -exclude (string)
-
Wildcard filename(s) to exclude.
- -indexdirectory (string)
-
Index directory.
- -maxindex (integer)
-
Maximum index length.
- -sortoptions (string)
-
Sort options, typically -T . to use current
directory for work files, or -k 1,1 to force GNU
sort to use the first field.
- -[no]systemsort (boolean)
-
Use system sort utility.
- -[no]cleanup (boolean)
-
Clean up temporary files.
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