alignwrap aligns a set of sequences to a seed alignment. This package is still being developed.

Here is a sample session with alignwrap:

% alignwrap

Mandatory qualifiers:

-inpath (string)

Directory containing the seed alignments (input).

-extn (string)

File extension of seed alignment files (input).

-scopfamilies (string)

scop families file containing the set of sequences in EMBL-like format.

-outpath (string)

Directory for extended alignments (output).

-outextn (string)

File extension of extended alignment files (output).